NEWS.md
Add beegfs_quota().
Now read_raw_sge_accounting() and ead_sge_accounting() can read the subset of data that is given by an sge_accounting_index_by_week week index table. This is one by passing to to argument offset.
Now read_raw_sge_accounting() and read_sge_accounting() accepts also file connections as input.
Add sge_failed_codes().
disk_free() failed because some columns were not recognized.
Field nbr_of_jobs returned by sge_make_week_index() was a cumulative sum, not number of jobs per week.
open_file_at(..., auto_close = TRUE) was not safe; it could end up closing the incorrect connection if the intended one had been closed and another one had been opened. Dropped options for auto_close to be on safe side.
Add add_weeks().
Add users_over_time().
Add generic function anonymize() with implementations for data.frame, raw_sge_accounting, and qstat objects.
Add read_qstat() for getting information on the jobs currently on the SGE queue.
Add make_file_index(), save_file_index(), and qread_file_index().
Add open_file_at().
read_raw_sge_accounting(), and therefore also read_sge_accounting(), gained argument offset.
Add anonymize_raw_sge_accounting().
Now read_raw_sge_accounting() records file header in attribute header.
Added an example SGE accounting file and examples how to process it.
parse_category() for sge_accounting objects.read_sge_accounting() to display how to inspect how much CPU time was spent on successful and failed jobs.Renamed host_table() column # Physical Cores to Physical Cores so that it does not conflict with #-comment lines in tab-delimited files.
The system("scripts", "system_info.R", package="wyntonquery") script is now robust against errors; if there’s an error querying a particular host, then that host is dropped from the final out.
The system("scripts", "system_info.R", package="wyntonquery") script now caches results from individual compute nodes.
host_info() now reports on cpu_model, which corresponds to the cpu_info() field model_name, e.g. “Intel(R) Core(TM) i7-8650U CPU @ 1.90GHz”. Previously, it tried to report on the CPU speed but that fluctuated from run to run because it was incorrectly inferred from the cpu_mhz field.
on_hostname() gained argument cache for controlling whether cached results should be considered or not.
It’s now possible to specify which hosts to query via environment variable R_WYNTONQUERY_INCLUDE.
on_hostname() gained argument on_error for controlling how errors should be handled.
cpu_info() did not handle upper-case letters in field names.Add host_table().
Add round_ram().
Add lscpu().
Add system_info().
Add disk_free().
Add queues().
Add on_hostname().
Add qhost() and cpu_info().